| --- |
| dataset_info: |
| - config_name: cells |
| features: |
| - name: name |
| dtype: string |
| - name: tissue |
| dtype: string |
| - name: top_expressed_genes |
| dtype: string |
| - name: top_expressed_pathways |
| dtype: string |
| - name: genetic_dependencies |
| dtype: string |
| - name: description |
| dtype: string |
| - name: top_pathways_from_num_markers |
| dtype: string |
| splits: |
| - name: cells |
| num_bytes: 288680 |
| num_examples: 110 |
| download_size: 167175 |
| dataset_size: 288680 |
| - config_name: chebi |
| features: |
| - name: chebi_id |
| dtype: string |
| - name: name |
| dtype: string |
| - name: definition |
| dtype: string |
| - name: formula |
| dtype: string |
| - name: smiles |
| dtype: string |
| - name: synonyms |
| list: string |
| - name: secondary_ids |
| list: string |
| splits: |
| - name: chebi |
| num_bytes: 12759478 |
| num_examples: 55121 |
| download_size: 3959122 |
| dataset_size: 12759478 |
| - config_name: genes |
| features: |
| - name: gene |
| dtype: string |
| - name: uniprot_id |
| dtype: string |
| - name: protein_name |
| dtype: string |
| - name: protein_function |
| dtype: string |
| - name: protein_domains |
| list: string |
| - name: protein_interactions |
| list: string |
| - name: pathways |
| list: string |
| - name: go_mf |
| list: string |
| - name: go_bp |
| list: string |
| - name: go_cc |
| list: string |
| - name: subcellular_location |
| dtype: string |
| - name: is_essential |
| dtype: bool |
| - name: important_pathways |
| list: string |
| splits: |
| - name: genes |
| num_bytes: 1459438599 |
| num_examples: 19597 |
| download_size: 71200446 |
| dataset_size: 1459438599 |
| - config_name: pathway_interactions |
| features: |
| - name: participant_a |
| dtype: string |
| - name: interaction_type |
| dtype: string |
| - name: participant_b |
| dtype: string |
| - name: chebi_names |
| dtype: string |
| - name: ascii_chebi_names |
| dtype: string |
| - name: interaction_type_description |
| dtype: string |
| - name: pathway_names |
| dtype: string |
| - name: mediator_ids |
| dtype: string |
| - name: interaction_data_source |
| dtype: string |
| - name: interaction_pubmed_id |
| dtype: string |
| - name: query_gene |
| dtype: string |
| splits: |
| - name: train |
| num_bytes: 596848476 |
| num_examples: 682786 |
| download_size: 11086613 |
| dataset_size: 596848476 |
| - config_name: pathway_id_mapping |
| features: |
| - name: msigdb_id |
| dtype: string |
| - name: pi_pathway_names |
| list: string |
| splits: |
| - name: pathway_id_mapping |
| num_bytes: 337116 |
| num_examples: 1704 |
| download_size: 84279 |
| dataset_size: 337116 |
| - config_name: pathways |
| features: |
| - name: pathway |
| dtype: string |
| - name: genes |
| list: string |
| - name: brief_description |
| dtype: string |
| splits: |
| - name: pathways |
| num_bytes: 309295731 |
| num_examples: 14743 |
| download_size: 61697287 |
| dataset_size: 309295731 |
| - config_name: reasoning_kaufman |
| features: |
| - name: gene_target |
| dtype: large_string |
| - name: protein_target |
| dtype: large_string |
| - name: cell_type |
| dtype: large_string |
| - name: tissue_type |
| dtype: large_string |
| - name: stimulation |
| dtype: large_string |
| - name: pathway_name |
| dtype: large_string |
| - name: pathway_change |
| dtype: large_string |
| - name: pathway_score |
| dtype: float64 |
| - name: experiment |
| dtype: large_string |
| - name: cell_file |
| dtype: large_string |
| splits: |
| - name: train |
| num_bytes: 3135446083 |
| num_examples: 9134718 |
| - name: validation |
| num_bytes: 391481892 |
| num_examples: 1140556 |
| - name: test |
| num_bytes: 391898272 |
| num_examples: 1141698 |
| download_size: 190255550 |
| dataset_size: 3918826247 |
| - config_name: reasoning_marson |
| features: |
| - name: gene_target |
| dtype: large_string |
| - name: protein_target |
| dtype: large_string |
| - name: cell_type |
| dtype: large_string |
| - name: tissue_type |
| dtype: large_string |
| - name: stimulation |
| dtype: large_string |
| - name: pathway_name |
| dtype: large_string |
| - name: pathway_change |
| dtype: large_string |
| - name: pathway_score |
| dtype: float64 |
| - name: experiment |
| dtype: large_string |
| - name: cell_file |
| dtype: large_string |
| - name: donor_id |
| dtype: large_string |
| splits: |
| - name: train |
| num_bytes: 10929550019 |
| num_examples: 29878544 |
| - name: validation |
| num_bytes: 1364643641 |
| num_examples: 3730619 |
| - name: test |
| num_bytes: 1365982302 |
| num_examples: 3734354 |
| download_size: 658993353 |
| dataset_size: 13660175962 |
| - config_name: reasoning_nadig_replogle_new |
| features: |
| - name: gene_target |
| dtype: string |
| - name: protein_target |
| dtype: string |
| - name: cell_type |
| dtype: string |
| - name: tissue_type |
| dtype: string |
| - name: pathway_name |
| dtype: string |
| - name: pathway_change |
| dtype: string |
| - name: pathway_score |
| dtype: float64 |
| - name: experiment |
| dtype: string |
| - name: cell_file |
| dtype: string |
| - name: is_essential |
| dtype: bool |
| - name: is_offtarget |
| dtype: bool |
| splits: |
| - name: train |
| num_bytes: 481106369 |
| num_examples: 1902445 |
| - name: test |
| num_bytes: 173949262 |
| num_examples: 696756 |
| download_size: 28379155 |
| dataset_size: 655055631 |
| - config_name: reasoning_norman |
| features: |
| - name: gene_target |
| list: string |
| - name: protein_target |
| list: string |
| - name: cell_type |
| dtype: string |
| - name: tissue_type |
| dtype: string |
| - name: stimulation |
| dtype: string |
| - name: pathway_name |
| dtype: string |
| - name: pathway_change |
| dtype: string |
| - name: pathway_score |
| dtype: float64 |
| - name: experiment |
| dtype: string |
| - name: cell_file |
| dtype: string |
| splits: |
| - name: train |
| num_bytes: 395155815 |
| num_examples: 1326862 |
| - name: validation |
| num_bytes: 49342701 |
| num_examples: 165672 |
| - name: test |
| num_bytes: 49397269 |
| num_examples: 165838 |
| download_size: 25791989 |
| dataset_size: 493895785 |
| - config_name: reasoning_papalexi2021 |
| features: |
| - name: gene_target |
| dtype: string |
| - name: protein_target |
| dtype: string |
| - name: cell_type |
| dtype: string |
| - name: tissue_type |
| dtype: string |
| - name: pathway_name |
| dtype: string |
| - name: pathway_change |
| dtype: string |
| - name: pathway_score |
| dtype: float64 |
| - name: experiment |
| dtype: string |
| - name: cell_file |
| dtype: string |
| splits: |
| - name: train |
| num_bytes: 35086161 |
| num_examples: 132716 |
| - name: validation |
| num_bytes: 4383551 |
| num_examples: 16571 |
| - name: test |
| num_bytes: 4388271 |
| num_examples: 16588 |
| download_size: 2657990 |
| dataset_size: 43857983 |
| - config_name: reasoning_xu2026_perturbfate |
| features: |
| - name: gene_target |
| dtype: large_string |
| - name: protein_target |
| dtype: large_string |
| - name: cell_type |
| dtype: large_string |
| - name: tissue_type |
| dtype: large_string |
| - name: stimulation |
| dtype: large_string |
| - name: pathway_name |
| dtype: large_string |
| - name: pathway_change |
| dtype: large_string |
| - name: pathway_score |
| dtype: float64 |
| - name: experiment |
| dtype: large_string |
| - name: cell_file |
| dtype: large_string |
| splits: |
| - name: train |
| num_bytes: 271090482 |
| num_examples: 767378 |
| - name: validation |
| num_bytes: 33847358 |
| num_examples: 95815 |
| - name: test |
| num_bytes: 33876878 |
| num_examples: 95911 |
| download_size: 13860042 |
| dataset_size: 338814718 |
| configs: |
| - config_name: cells |
| data_files: |
| - split: cells |
| path: cells/cells-* |
| - config_name: chebi |
| data_files: |
| - split: chebi |
| path: chebi/chebi-* |
| - config_name: genes |
| data_files: |
| - split: genes |
| path: genes/genes-* |
| - config_name: pathway_interactions |
| data_files: |
| - split: train |
| path: pathway_interactions/train-* |
| - config_name: pathway_id_mapping |
| data_files: |
| - split: pathway_id_mapping |
| path: pathway_id_mapping/pathway_id_mapping-* |
| - config_name: pathways |
| data_files: |
| - split: pathways |
| path: pathways/pathways-* |
| - config_name: reasoning_kaufman |
| data_files: |
| - split: train |
| path: reasoning_kaufman/train-* |
| - split: validation |
| path: reasoning_kaufman/validation-* |
| - split: test |
| path: reasoning_kaufman/test-* |
| - config_name: reasoning_marson |
| data_files: |
| - split: train |
| path: reasoning_marson/train-* |
| - split: validation |
| path: reasoning_marson/validation-* |
| - split: test |
| path: reasoning_marson/test-* |
| - config_name: reasoning_nadig_replogle_new |
| data_files: |
| - split: train |
| path: reasoning_nadig_replogle_new/train-* |
| - split: test |
| path: reasoning_nadig_replogle_new/test-* |
| - config_name: reasoning_norman |
| data_files: |
| - split: train |
| path: reasoning_norman/train-* |
| - split: validation |
| path: reasoning_norman/validation-* |
| - split: test |
| path: reasoning_norman/test-* |
| - config_name: reasoning_papalexi2021 |
| data_files: |
| - split: train |
| path: reasoning_papalexi2021/train-* |
| - split: validation |
| path: reasoning_papalexi2021/validation-* |
| - split: test |
| path: reasoning_papalexi2021/test-* |
| - config_name: reasoning_xu2026_perturbfate |
| data_files: |
| - split: train |
| path: reasoning_xu2026_perturbfate/train-* |
| - split: validation |
| path: reasoning_xu2026_perturbfate/validation-* |
| - split: test |
| path: reasoning_xu2026_perturbfate/test-* |
| --- |
| |
